A hybrid simulation of continuum and molecular dynamics for super-hydrophobics

Speaker: 

Professor Guowei He

Institution: 

LNM, Institute of Mechanics, Chinese Academy of Sciences

Time: 

Monday, November 15, 2010 - 4:00pm

Location: 

RH 306

Micro- and nano-fluidics involve a broad range of scales from the atomic scales to the continuum ones. A full molecular dynamics simulation is able to simulate the fluid flows at the micro- and nano-scales. However, it is computationally prohibitive due to the limitation of computer memory and computation time. On the other hand, a full continuum description, such as the Navier-Stokes equations, is computationally available but unable to describe the fluid flows in the region where the continuum assumption breaks down. A typical problem of this kind is the superhydrophobics: the patterned roughness on a hydrophobic solid surface enhances its hydrophobics and yields a large slip velocity at the solid surfaces. The superhydrophobics property is particularly attractive, since it may provide an efficient method for mass transport and drag reduction in micro- and nano-fluidics. An appropriate approach to simulate the superhydrophobics is to use the molecular dynamics in one region where the continuum assumption breaks down and use the Navier-Stokes equations in another region where the continuum assumption holds true, and those two descriptions are coupled in the overlap region. The computation time in the hybrid method is expected to be much less than that in the full molecular dynamics simulation. The challenge is how to couple the Navier-Stokes equations with the molecular dynamics simulation. In this talk, I will introduce our recent work on the dynamic coupling model (Chem. Eng. Sci. 62 3574-3579 2007) for the hybrid computation and use the hybrid simulation to study superhydrophobics. The numerical issue associated with the hybrid method will be discussed.

Differential Optical Absorption Spectroscopy: Observing Atmospheric Composition with Spectroscopic Eyes

Speaker: 

Professor Jochen Stutz

Institution: 

UCLA

Time: 

Monday, November 8, 2010 - 4:00pm

Location: 

RH 306

Many of todays environmental problems, such as air pollution and climate change, are closely related to surprisingly small changes in the composition of our atmosphere. A large variety of very sensitive experimental methods are used today to track these changes with the goal to monitor how human activity impacts the atmosphere and to provide information on which to base possible solutions. Among the many methods to study and monitor atmospheric composition, optical remote sensing has become one of the most widely used techniques. In the ultraviolet and visible spectral regions, where the sun intensity has its maximum and many artificial light sources exist, the method of choice to measure trace gases is Differential Optical Absorption Spectroscopy (DOAS). Examples of DOAS applications include atmospheric chemistry research, emission measurements from industrial facilities, monitoring of volcano activity, global air pollutant observations from space, etc.

DOAS is a method that relies on the measurements of narrow band trace gas absorption features in light originating from the sun, artificial light sources, or solar light scattered in the atmosphere. A number of challenges emerge from this approach. Trace gas absorption features are often present at the same wavelength range and need to be separated accurately from each other. Similarly, the spectral structure of the respective light and the impact of unwanted absorbers must be separated from the trace gas absorptions of interest. As the trace gas absorptions are often very weak, a number of instrumental effects have to be considered when deriving concentrations and their uncertainties. These challenges have lead to the development of numerical retrieval methods, which are at the heart of the DOAS method.

In this talk I will give a general introduction into the DOAS method and present some of its most significant applications. I will discuss the mathematical methods to retrieve trace concentrations from optical absorption measurements and point out the current limitations of the retrieval approach and thus the DOAS method in general.

Generalized Foldy-Lax Formulation for a two-Scale Scattering Problem

Speaker: 

Professor Pengjun Li

Institution: 

Purdue University

Time: 

Monday, November 1, 2010 - 4:00pm

Location: 

RH 306

Scattering problems play an essential role in many scientific areas such as
radar and sonar (e.g., stealth aircraft design and submarine detection),
geophysical exploration (e.g., oil and gas exploration), medical imaging (e.g., breast cancer detection), and near-field optical microscopy (e.g., imaging of small scale biological samples). In this talk, we consider the scattering problem of a time-harmonic plane wave incident on a heterogeneous medium consisting of isotropic point (small scale) scatterers and an extended (wavelength comparable) obstacle scatterer in three dimensional space. The motivation arises from the near-field imaging, which is a vigorously developed research field because it provides an effective approach to break the diffraction limit and obtain images with subwavelength resolution.

The classical Foldy-Lax method provides an efficient approach to compute the scattered field from the interaction between the incident wave and the point scatterers; while boundary integral equation methods have been well studied for solving the scattering problem solely involving extended obstacle scatterers. It is a challenging two-scale multiple scattering problem when both the point scatterers and the extended obstacles are present. We developed a generalized Foldy-Lax method to fully take account of the multiple scattering in the heterogeneous medium. Two different but consistent formulations will be introduced: a series solution formulation and an integral equation formulation. The series solution formulation will be shown as an efficient iterative scheme to the integral equation formulation. The convergence of the scattered fields and the far-field patterns from the series solution formulation will be characterized in terms of scattering coefficients. Numerical experiments will be presented to show the agreement and the effectiveness of the proposed two approaches.

FRONT PROPAGATION IN NARROW CHANNELS: WHAT DARRIEUS AND LANDAU DIDN'T TELL YOU

Speaker: 

Professor Paul Ronney

Institution: 

USC

Time: 

Monday, October 25, 2010 - 4:00pm

Location: 

RH 306

It is well known that steadily propagating planar premixed-gas flame fronts are unstable to a number of disturbances, notably that due to thermal expansion as first analyzed by Darrieus (1938) and Landau (1944). However, in most laboratory experiments the effects of the Darrieus-Landau (DL) instability are masked by the use of open geometries such as Bunsen, counterflow or V-flames, where thermal expansion is relaxed in the transverse directions. With this motivation the front speeds and wrinkling spectra of premixed flames propagating in quasi-2D channels (Hele-Shaw cells) were studied in order to avoid suppression of DL instabilities. CH4 and C3H8 fuels with N2 and CO2 diluents were used to assess the effects of Lewis number (Le) and thus diffusive-thermal (DT) instabilities. Upward, downward and horizontal propagation configurations were tested to assess the effects of buoyancy and thus Rayleigh-Taylor (RT) instabilities. Varying mixture strengths and thus laminar burning velocities (SL) were employed to assess heat loss effects.

Wrinkling and thus flame speed enhancement was observed even for downward propagating (RT stable) flames have high Le (DT stable) due to the effects of DL and the viscosity increase (Saffman-Taylor, ST) instability across the front. The quasi-steady wrinkled flame speed (UT) was always higher than (SL), typically by a factor of 3. Values of UT/SL correlated well with a scaled growth rate parameter (K) based on the Joulin-Sivashinsky model of flame instabilities in narrow channels due to DL, ST and buoyancy effects.  The observed correlation was UT/SL = 1 + K, thus K serves a role similar to u' in turbulent combustion in the laminar flamelet regime.  Wrinkling spectra exhibited a marked change as the cell thickness decreased due to a change in the dominant instability mechanism from DL to ST. Flame wrinkling in the plane of the cell and front curvature in the transverse dimension are found to be of similar importance in affecting UT.

These results indicate that the behavior of practical flames in confined geometries such as internal combustion engines or gas turbines is quite different from that inferred from laboratory experiments conducted in open geometries. The viability of modeling this type of front propagation using a modified level-set (G equation) approach is discussed.

A second order virtual node algorithm for Poisson Interface Problems on Irregular Domains

Speaker: 

Professor Joseph Teran

Institution: 

UCLA

Time: 

Monday, October 18, 2010 - 4:00pm

Location: 

RH 306

I will present a second order accurate, geometrically flexible and easy to implement method for solving the variable coefficient Poisson equation with interfacial discontinuities on an irregular domain. We discretize the equations using an embedded approach on a uniform Cartesian grid employing virtual nodes at interfaces and boundaries. A variational method is used to define numerical stencils near these special virtual nodes and a Lagrange multiplier approach is used to enforce jump conditions and Dirichlet boundary conditions. Our combination of these two aspects yields a symmetric positive definite discretization. In the general case, we obtain the standard 5-point stencil away from the interface. For the specific case of interface problems with continuous coefficients, we present a discontinuity removal technique that admits use of the standard 5-point finite difference stencil everywhere in the domain. Numerical experiments indicate second order accuracy in L-infinty.

A boundary integral method for simulating the dynamics of an epitaxial island

Speaker: 

Professor Shuwang Li

Institution: 

Illinois Institute of Technology

Time: 

Monday, October 11, 2010 - 4:00pm

Location: 

RH 306

Epitaxial crystal growth by depositing atoms from a gas phase onto a substrate is a nonequilibrium process involving both kinetics and thermodynamics. At the early stages of growth, adatoms on the substrate often form small isolated islands. The morphological evolution (e.g. growth or shrink) of these islands is determined by many physical processes such as atom adsorption and desorption, adatom diffusion, adatom attachment to island boundaries or detachment from the boundaries. Mathematical formulation of the problem leads to a moving boundary/interface problem.

In this talk, we present a boundary integral method for computing the quasisteady evolution of an epitaxial island. The problem consists of an adatom diffusion equation (with desorption) on terrace and a kinetic boundary condition at the step (island boundary). The normal velocity for step motion is determined by a two-sided flux. The integral formulation of the problem involves both double and single layer potentials due to the kinetic boundary condition. Numerical tests on a growing/shrinking island are in excellent agreement with the analytical solution and demonstrate that the method is stable, efficient and spectrally accurate in space.
Nonlinear simulations for the growth of perturbed circular islands show that sharp tips and facets will form during growth instead of the usual tip-splitting events for isotropic Laplacian growth. The numerical techniques presented here can be applied generally to a class of free/moving boundary problems in physical and biological science.

Mathematical and statistical methods for quantifying the uncertainties in the assessment and detection of climate changes

Speaker: 

Professor Samuel Shen

Institution: 

San Diego State University

Time: 

Monday, October 4, 2010 - 4:00pm

Location: 

RH 306

This lecture will describe the mathematical and statistical methods of estimating the errors in the optimal assessment of the past climate change, quantifying the uncertainties in the climate change detection, and analyzing the main uncertainty sources for climate predictions. Empirical orthogonal functions are extensively used to deal with spatial inhomogeneity. Temporal non-stationarity and model nonlinearity will be discussed. Detailed error analyses of the annual mean global and regional averages of the surface air temperature since 1861 will be presented.

Non-essential sites improve phosphorylation switch

Speaker: 

Professor German Enciso

Institution: 

UCI

Time: 

Monday, September 27, 2010 - 4:00pm

Location: 

RH 306

Multisite phosphorylation is a common form of post-translational protein regulation which has been used to increase the switch-like behavior of the protein response to increasing kinase concentrations. In this talk we show that the switch-like response of multisite phosphoproteins is strongly enhanced by non-essential phosphorylation sites, a mechanism that is robust to parameter changes and easily implemented in nature. We describe analytic estimates for the Hill exponent of the switch-like response and suggest a possible evolutionary mechanism for the relatively large numbers of phosphorylation sites found in various proteins.

Modeling and Numerical studies of PEM Fuel Cell Via a Novel Automated FEM/FVM Program Generation

Speaker: 

Professor Pengtao Sun

Institution: 

University of Nevada, Las Vegas

Time: 

Monday, September 20, 2010 - 4:00pm

Location: 

RH 306

This talk is dedicated to the studies of a three-dimensional, nonisothermal, anisotropic, two-phase transport model of proton exchange membrane fuel cell (PEMFC) and its efficient numerical method. Besides addressing the conservation equations of mass, momentum, species, charge and energy in view of the nonisothermality, anisotropy and multiphase flow in PEMFC model, from an efficient numerical method's point of view, we present some new formulations for species equations in the interests of the interactions among the species. In a framework of finite element-upwind finite volume method, some efficient numerical methods are designed and investigated in order to achieve fast and convergent numerical simulation for this PEMFC model.

Numerical implementation is done by using a novel automated finite element/finite volume program generator (FEPG). By virtue of a high-level algorithm description language (script), component programming and human intelligence technologies, FEPG can quickly generate finite element/finite volume source code for PEMFC simulation. Thus, one can focus on the efficient algorithm research without being distracted by the tedious computer programming on finite element/finite volume methods. The 3D numerical simulations demonstrate that a convergent and reasonable physical solution can be attained within 100 steps or so, comparing to the oscillating and nonconvergent nonlinear iterations conducted by the standard finite element/finite volume method. Numerical success demonstrates that FEPG is an efficient tool for both algorithm research and software development of a 3D multiphysics PEMFC model.

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